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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
3
single cell RNA-seq
1
FAIRE-seq
Assay category
153
DNA binding
92
Transcription
10
DNA accessibility
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
569
February, 2021
280
November, 2017
276
May, 2021
260
May, 2020
252
August, 2017
207
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
77
December, 2017
72
July, 2019
72
September, 2018
71
November, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
August, 2021
31
February, 2018
30
December, 2018
26
January, 2019
18
May, 2022
16
March, 2020
12
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
Available data
273
bigWig
258
fastq
255
bam
142
bed narrowPeak
92
tsv
42
bigBed narrowPeak
41
bed broadPeak
38
tagAlign
33
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
249
Homo sapiens
Biosample type
157
tissue
49
in vitro differentiated cells
49
primary cell
Organ
156
pancreas
63
connective tissue
20
epithelium
19
liver
14
adipose tissue
Project
255
AMP
Genome assembly (visualization)
255
hg19
252
GRCh38
Lab
255
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
255 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
21
89
1
1
liver
18
pancreas
12
white adipose tissue
12
adipose tissue
1
+ See 2 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
2
pancreatic beta cell
7
1
pancreatic acinar cell
1
1
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