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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
7
WGBS
6
RRBS
3
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
77
DNA binding
13
DNA methylation
4
DNA accessibility
Target of assay
39
histone
39
histone modification
37
control
25
broad histone mark
14
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
206
August, 2021
200
May, 2022
170
February, 2023
144
February, 2021
122
May, 2021
103
May, 2020
102
November, 2017
98
October, 2019
94
August, 2017
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
October, 2017
1
September, 2018
Available data
tagAlign
39
fastq
33
bam
25
bigWig
24
bed narrowPeak
22
bed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
4
bigBed narrowPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
95
Homo sapiens
Biosample type
73
tissue
16
primary cell
6
in vitro differentiated cells
Organ
39
connective tissue
34
adipose tissue
26
pancreas
15
liver
12
epithelium
11
musculature of body
Project
95
AMP
Genome assembly (visualization)
241
hg19
GRCh38
Lab
95
AMP-T2D consortium
files.file_type!
tagAlign
assembly!
GRCh38
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
pCHi-C
tissue
subcutaneous abdominal adipose tissue
28
3
liver
10
3
1
islet of Langerhans
12
1
skeletal muscle tissue
7
4
adipose tissue
1
1
+ See 2 more…
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
1
1
2
in vitro differentiated cells
adipocyte
5
white fat cell
1
See all biosamples
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