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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
27
snATAC-seq
25
ATAC-seq
21
single cell RNA-seq
ChIP-seq
6
WGBS
5
GRO-seq
3
pCHi-C
3
snDrop-seq
Assay category
566
Transcription
52
DNA accessibility
6
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
567
bam
562
tsv
557
bigWig
89
txt
54
fastq
18
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
1
bedpe bed3+
Organism
719
Homo sapiens
Biosample type
547
tissue
89
cell line
51
primary cell
31
in vitro differentiated cells
1
stem cell
Organ
457
connective tissue
388
adipose tissue
150
bone element
60
artery
60
blood vessel
60
heart
60
vasculature
35
epithelium
35
pancreas
8
kidney
8
skeleton
6
limb
3
liver
1
blood
1
bodily fluid
1
embryo
1
musculature of body
Project
674
AMP
45
HPAP
Genome assembly (visualization)
575
hg19
566
GRCh38
5
hg18
Lab
674
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
719 results
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total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
GRO-seq
pCHi-C
snDrop-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
GM12878
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
2
6
osteoblast
1
1
1
pancreatic acinar cell
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
+ See 2 more…
stem cell
hESC
1
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