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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
total RNA-seq
107
ATAC-seq
53
ChIP-seq
34
pCHi-C
10
Hi-C
5
GRO-seq
3
single cell RNA-seq
Assay category
208
Transcription
107
DNA accessibility
53
DNA binding
10
3D chromatin structure
Target of assay
30
histone
30
histone modification
30
narrow histone mark
23
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
302
bam
291
bigWig
237
tsv
50
tagAlign
30
bed narrowPeak
13
bedpe bed3+
10
hic
9
fastq
2
ibed
Organism
417
Homo sapiens
Biosample type
235
tissue
151
primary cell
13
cell line
13
in vitro differentiated cells
5
stem cell
Organ
197
liver
17
pancreas
9
epithelium
7
heart
6
musculature of body
4
blood vessel
4
connective tissue
4
vasculature
3
adipose tissue
2
brain
2
intestine
2
kidney
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
365
AMP
52
T1D
Genome assembly (visualization)
298
hg19
226
GRCh38
5
hg18
Lab
372
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
BIOSAMPLE
ASSAY
417 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
GRO-seq
single cell RNA-seq
tissue
liver
144
50
1
1
islet of Langerhans
2
2
2
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 17 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
GM12878
1
HepG2
1
MCF-7
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
Posterior foregut
1
definitive endodermal cell
1
embryonic stem cell
1
+ See 3 more…
stem cell
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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