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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
3
single cell RNA-seq
1
Hi-C
1
pCHi-C
Assay category
154
DNA binding
3
Transcription
1
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
33
transcription factor
27
control
7
RNA binding protein
2
chromatin remodeller
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
157
bam
130
bigWig
127
bed narrowPeak
127
bigBed narrowPeak
39
fastq
3
tsv
1
bedpe bed3+
Organism
159
Homo sapiens
Biosample type
122
tissue
28
cell line
8
primary cell
1
in vitro differentiated cells
Organ
50
blood vessel
50
vasculature
28
brain
27
blood
27
bodily fluid
21
heart
8
epithelium
7
limb
7
musculature of body
7
spleen
5
artery
5
kidney
5
pancreas
1
adipose tissue
1
connective tissue
1
liver
Project
159
AMP
Genome assembly (visualization)
130
hg19
129
GRCh38
Lab
159
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 7 more…
cell line
GM12878
27
HepG2
1
primary cell
kidney epithelial cell
5
pancreatic alpha cell
2
pancreatic acinar cell
1
in vitro differentiated cells
white fat cell
1
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