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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
ChIP-seq
3
single cell RNA-seq
2
total RNA-seq
1
pCHi-C
Assay category
474
DNA binding
5
Transcription
Target of assay
257
transcription factor
116
histone
116
histone modification
98
control
69
broad histone mark
66
recombinant protein
47
narrow histone mark
46
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
465
bam
382
fastq
378
bigWig
354
bed narrowPeak
353
bigBed narrowPeak
78
tagAlign
66
bed broadPeak
60
bigBed broadPeak
5
tsv
3
tar
1
bedpe bed3+
Organism
480
Homo sapiens
Biosample type
315
cell line
156
tissue
8
primary cell
1
in vitro differentiated cells
Organ
315
liver
91
brain
56
pancreas
24
adipose tissue
24
connective tissue
11
epithelium
vasculature
3
blood vessel
Project
480
AMP
Genome assembly (visualization)
326
GRCh38
325
hg19
Lab
480
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
organ_slims!
vasculature
BIOSAMPLE
ASSAY
480 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
pCHi-C
cell line
HepG2
315
tissue
body of pancreas
33
layer of hippocampus
22
endocrine pancreas
16
caudate nucleus
15
substantia nigra
15
+ See 6 more…
primary cell
astrocyte of the cerebellum
3
pancreatic acinar cell
1
2
pancreatic alpha cell
2
in vitro differentiated cells
white fat cell
1
See all biosamples
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