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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
15
total RNA-seq
9
RRBS
6
single cell RNA-seq
5
Hi-C
4
DNase-seq
2
ATAC-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
24
DNA binding
23
Transcription
9
DNA methylation
7
DNA accessibility
5
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
6
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
52
bam
48
bigWig
23
tsv
21
bed narrowPeak
13
bigBed narrowPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
hdf5
3
fastq
1
hic
1
tar
Organism
68
Homo sapiens
Biosample type
319
tissue
68
primary cell
30
cell line
9
in vitro differentiated cells
Organ
49
epithelium
26
vasculature
25
blood vessel
21
vein
18
kidney
8
connective tissue
7
brain
5
heart
3
liver
3
musculature of body
3
pancreas
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
68
AMP
Genome assembly (visualization)
60
hg19
43
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
68 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
single cell RNA-seq
Hi-C
DNase-seq
ATAC-seq
small RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
1
2
1
epithelial cell of proximal tubule
7
1
1
cerebellar granule cell
2
kidney epithelial cell
1
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac ventricle fibroblast
1
choroid plexus epithelial cell
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
glomerular endothelial cell
1
hepatocyte
1
mesangial cell
1
pancreatic acinar cell
1
pericardium fibroblast
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
smooth muscle cell of the coronary artery
1
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