Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
total RNA-seq
9
RRBS
7
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
small RNA-seq
Assay category
18
Transcription
9
DNA methylation
7
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
29
bigWig
18
bam
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
7
fastq
4
bed bed3+
4
hdf5
Organism
38
Homo sapiens
Biosample type
77
tissue
38
primary cell
Organ
20
epithelium
8
connective tissue
7
brain
7
kidney
7
pancreas
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
31
AMP
7
HPAP
Genome assembly (visualization)
31
hg19
25
GRCh38
Lab
31
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
38 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
small RNA-seq
primary cell
pancreatic alpha cell
5
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 22 more…
See all biosamples
Download