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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
89
total RNA-seq
12
ATAC-seq
4
RRBS
4
WGBS
1
DNase-seq
1
FAIRE-seq
Assay category
162
DNA binding
89
Transcription
14
DNA accessibility
8
DNA methylation
Target of assay
86
histone modification
85
histone
45
narrow histone mark
45
transcription factor
39
broad histone mark
31
control
6
RNA binding protein
2
chromatin remodeller
Date released
266
August, 2017
260
November, 2017
94
December, 2017
79
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
13
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
Available data
294
fastq
282
bam
279
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
272
Homo sapiens
Biosample type
169
tissue
53
in vitro differentiated cells
51
primary cell
Organ
169
pancreas
71
connective tissue
36
epithelium
28
liver
18
adipose tissue
2
musculature of body
Project
266
AMP
7
HPAP
Genome assembly (visualization)
237
GRCh38
234
hg19
Lab
266
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
273 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
1
1
white adipose tissue
12
pancreas
8
adipose tissue
2
3
+ See 3 more…
in vitro differentiated cells
adipocyte
53
primary cell
pancreatic alpha cell
13
6
pancreatic beta cell
13
3
pancreatic endocrine cell
12
skeletal muscle myoblast
2
1
pancreatic acinar cell
1
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