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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
89
total RNA-seq
12
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
1
FAIRE-seq
Assay category
98
DNA binding
89
Transcription
18
DNA accessibility
15
DNA methylation
Target of assay
199
histone modification
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
213
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
192
fastq
180
bam
157
bigWig
89
tsv
35
bed narrowPeak
21
bed bed3+
12
bigBed narrowPeak
11
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
219
Homo sapiens
Biosample type
161
tissue
31
in vitro differentiated cells
28
primary cell
Organ
129
pancreas
56
connective tissue
25
adipose tissue
22
epithelium
22
liver
7
musculature of body
Project
213
AMP
7
HPAP
Genome assembly (visualization)
154
GRCh38
154
hg19
Lab
213
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
histone
month_released!
March, 2019
BIOSAMPLE
ASSAY
220 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
14
89
1
1
liver
16
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
+ See 4 more…
in vitro differentiated cells
adipocyte
30
1
primary cell
pancreatic alpha cell
6
6
pancreatic beta cell
6
3
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
See all biosamples
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