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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
15
ChIP-seq
Assay category
114
DNA accessibility
60
Transcription
41
DNA methylation
15
DNA binding
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
50
bed narrowPeak
48
fastq
41
bigWig
39
bam
14
tagAlign
7
txt
6
bigBed narrowPeak
4
bed broadPeak
1
bed bed3+
Organism
230
Homo sapiens
Biosample type
141
primary cell
89
tissue
Organ
116
pancreas
87
epithelium
40
liver
16
brain
2
musculature of body
1
adipose tissue
1
connective tissue
1
spleen
Project
141
HPAP
89
AMP
Genome assembly (visualization)
52
hg19
21
GRCh38
Lab
141
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
230 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
27
25
pancreatic beta cell
15
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
19
6
brain
15
body of pancreas
4
skeletal muscle tissue
1
1
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