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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
15
total RNA-seq
7
ATAC-seq
3
Hi-C
1
MPRA
Assay category
24
DNA binding
15
Transcription
7
DNA accessibility
3
3D chromatin structure
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
46
fastq
39
bam
38
bigWig
16
bed narrowPeak
15
tsv
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
49
Homo sapiens
Biosample type
39
in vitro differentiated cells
10
primary cell
1
cell line
Organ
13
embryo
10
epithelium
10
pancreas
Project
40
AMP
10
HPAP
Genome assembly (visualization)
38
GRCh38
34
hg19
Lab
40
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
50 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
MPRA
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
primary cell
pancreatic alpha cell
5
1
pancreatic beta cell
2
1
pancreatic acinar cell
1
cell line
MIN6
1
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