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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
total RNA-seq
43
ChIP-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
311
August, 2017
251
October, 2019
183
May, 2021
163
August, 2021
121
February, 2021
120
May, 2019
94
December, 2017
80
April, 2019
78
November, 2018
75
May, 2022
74
October, 2018
56
July, 2019
51
May, 2020
48
July, 2018
47
September, 2023
45
March, 2020
43
April, 2018
40
September, 2020
35
December, 2018
33
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
November, 2019
15
October, 2017
10
November, 2020
9
April, 2020
7
February, 2023
6
September, 2017
5
December, 2019
5
January, 2018
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
May, 2023
1
March, 2019
Available data
98
tsv
30
bed narrowPeak
30
bigWig
24
bam
24
tagAlign
8
txt
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
162
Homo sapiens
Biosample type
109
tissue
27
cell line
23
in vitro differentiated cells
4
primary cell
Organ
92
heart
26
liver
11
kidney
6
blood vessel
6
epithelium
6
vasculature
3
connective tissue
3
pancreas
2
artery
1
adipose tissue
Project
163
AMP
Genome assembly (visualization)
33
hg19
16
GRCh38
Lab
126
AMP-T2D consortium
26
Bing Ren, UCSD
9
Katalin Susztak, Upenn
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
163 results
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single cell RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
8
1
+ See 11 more…
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
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