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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
82
DNA accessibility
DNA binding
3
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
144
February, 2021
140
May, 2022
111
February, 2023
101
May, 2020
96
August, 2021
52
May, 2021
46
March, 2020
43
July, 2019
42
October, 2019
28
November, 2019
26
August, 2017
17
November, 2018
16
January, 2021
14
September, 2018
12
November, 2020
11
May, 2023
10
April, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
September, 2017
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
March, 2023
Available data
76
bed narrowPeak
64
xls
10
bam
2
bed bed3+
2
bedpe bed3+
2
bigWig
2
hic
1
vcf
Organism
95
Homo sapiens
Biosample type
73
tissue
14
in vitro differentiated cells
9
cell line
Organ
73
kidney
5
connective tissue
4
liver
3
pancreas
2
epithelium
1
adipose tissue
Project
96
AMP
Genome assembly (visualization)
74
GRCh38
16
hg19
Lab
71
Katalin Susztak, Upenn
13
AMP-T2D consortium
8
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
Transcription
DNA binding
BIOSAMPLE
ASSAY
96 results
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Clear Filters
ATAC-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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