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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
76
ATAC-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
163
DNA binding
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
112
histone
112
histone modification
67
broad histone mark
45
narrow histone mark
35
control
16
transcription factor
6
RNA binding protein
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
203
bed narrowPeak
154
bam
129
bigWig
97
bigBed narrowPeak
64
xls
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
258
Homo sapiens
Biosample type
188
tissue
35
in vitro differentiated cells
27
cell line
9
primary cell
Organ
78
kidney
50
blood vessel
50
vasculature
28
brain
26
liver
21
heart
11
epithelium
7
limb
7
musculature of body
5
artery
5
connective tissue
5
pancreas
1
adipose tissue
Project
259
AMP
Genome assembly (visualization)
186
GRCh38
142
hg19
Lab
158
AMP-T2D consortium
71
Katalin Susztak, Upenn
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
259 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 9 more…
in vitro differentiated cells
neural progenitor cell
21
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
kidney epithelial cell
5
hepatocyte
4
See all biosamples
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