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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
23
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
82
DNA accessibility
23
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
318
November, 2017
199
June, 2019
152
February, 2021
140
May, 2022
124
August, 2017
124
May, 2020
119
August, 2021
111
February, 2023
88
October, 2019
87
November, 2018
77
May, 2021
63
December, 2017
46
March, 2020
44
October, 2018
43
July, 2019
35
December, 2018
31
November, 2019
28
May, 2019
20
April, 2019
18
January, 2019
16
January, 2021
14
September, 2018
12
November, 2020
11
May, 2023
11
October, 2017
11
September, 2017
10
April, 2020
8
February, 2018
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
87
bed narrowPeak
64
xls
18
bam
13
bigWig
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
118
Homo sapiens
Biosample type
73
tissue
24
cell line
21
in vitro differentiated cells
1
primary cell
Organ
73
kidney
20
liver
5
connective tissue
3
epithelium
3
pancreas
1
adipose tissue
Project
119
AMP
Genome assembly (visualization)
74
GRCh38
27
hg19
Lab
71
Katalin Susztak, Upenn
23
Bing Ren, UCSD
21
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
Transcription
target.investigated_as!
histone
BIOSAMPLE
ASSAY
119 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
cell line
HepG2
15
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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