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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
total RNA-seq
110
ATAC-seq
106
single cell RNA-seq
6
snATAC-seq
Assay category
362
Transcription
208
DNA binding
116
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
612
February, 2021
290
May, 2020
262
August, 2021
216
May, 2021
199
February, 2023
187
June, 2019
168
July, 2018
159
May, 2022
100
August, 2017
73
July, 2019
63
October, 2019
59
September, 2020
49
April, 2018
47
September, 2023
46
November, 2019
41
September, 2018
25
February, 2020
19
April, 2020
19
March, 2020
16
January, 2021
15
February, 2018
15
May, 2023
11
November, 2018
8
December, 2019
8
October, 2017
7
August, 2020
6
November, 2020
5
January, 2019
5
September, 2017
4
March, 2019
4
March, 2023
3
August, 2018
3
January, 2018
3
June, 2018
2
October, 2018
1
August, 2022
Available data
296
tsv
211
bam
197
bigWig
89
bed narrowPeak
64
xls
57
txt
2
bed bed3+
Organism
478
Homo sapiens
Biosample type
265
tissue
108
in vitro differentiated cells
68
primary cell
37
cell line
Organ
127
kidney
95
heart
58
pancreas
22
epithelium
10
embryo
9
liver
6
blood vessel
6
vasculature
3
connective tissue
2
artery
Project
427
AMP
51
T1D
Genome assembly (visualization)
275
GRCh38
220
hg19
Lab
275
AMP-T2D consortium
127
Katalin Susztak, Upenn
64
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
BIOSAMPLE
ASSAY
478 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
kidney
49
64
8
6
islet of Langerhans
37
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 11 more…
in vitro differentiated cells
cardiomyocytes
59
neural progenitor cell
7
10
embryonic stem cell
5
5
induced pluripotent stem cell
9
adipocyte
1
+ See 12 more…
primary cell
monocyte
52
13
CD8-positive, alpha-beta T cell
2
embryonic stem cell
1
cell line
EndoC_BH1
4
16
HepG2
9
H1-hESC
8
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