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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
6
snATAC-seq
2
FAIRE-seq
Assay category
427
Transcription
208
DNA binding
124
DNA accessibility
28
DNA methylation
11
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
96
bed narrowPeak
64
xls
31
bam
15
bigWig
2
bigBed narrowPeak
Organism
124
Homo sapiens
Biosample type
78
tissue
17
in vitro differentiated cells
16
cell line
13
primary cell
Organ
71
kidney
16
epithelium
16
pancreas
4
heart
2
blood vessel
2
brain
2
connective tissue
2
vasculature
1
artery
Project
124
AMP
Genome assembly (visualization)
93
GRCh38
37
hg19
Lab
70
Katalin Susztak, Upenn
47
AMP-T2D consortium
5
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
124 results
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ATAC-seq
snATAC-seq
FAIRE-seq
tissue
kidney
64
6
1
heart left ventricle
2
coronary artery
1
frontal cortex
1
posterior cingulate cortex
1
+ See 2 more…
in vitro differentiated cells
neural progenitor cell
10
embryonic stem cell
5
adipocyte
1
osteoblast
1
cell line
EndoC_BH1
16
primary cell
monocyte
13
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