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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
59
total RNA-seq
14
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
14
DNA binding
6
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
2
broad histone mark
2
histone
2
histone modification
Date released
195
August, 2021
141
February, 2021
135
August, 2017
125
November, 2017
122
May, 2022
102
February, 2023
84
October, 2019
67
May, 2021
56
September, 2020
47
September, 2023
32
March, 2020
31
June, 2019
29
October, 2018
26
May, 2020
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
November, 2018
16
January, 2021
16
July, 2019
15
April, 2019
10
November, 2020
9
October, 2017
8
February, 2018
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
3
May, 2023
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
108
tsv
57
txt
9
bam
9
tagAlign
1
bed narrowPeak
1
bedpe bed3+
1
bigWig
1
vcf
Organism
194
Homo sapiens
Biosample type
164
tissue
21
cell line
9
in vitro differentiated cells
1
primary cell
Organ
92
heart
65
kidney
17
liver
6
blood vessel
6
vasculature
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
connective tissue
Project
195
AMP
Genome assembly (visualization)
hg19
31
GRCh38
Lab
111
AMP-T2D consortium
63
Katalin Susztak, Upenn
21
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
assembly!
hg19
BIOSAMPLE
ASSAY
195 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
9
primary cell
hepatocyte
1
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