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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
123
DNA binding
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
80
histone
80
histone modification
46
broad histone mark
34
narrow histone mark
26
control
17
transcription factor
5
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
315
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
171
bed narrowPeak
128
bam
123
tsv
112
bigWig
64
bigBed narrowPeak
64
xls
57
txt
24
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
394
Homo sapiens
Biosample type
309
tissue
42
cell line
40
in vitro differentiated cells
4
primary cell
Organ
153
kidney
149
heart
35
liver
8
embryo
6
blood vessel
6
vasculature
4
epithelium
3
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
395
AMP
Genome assembly (visualization)
169
GRCh38
123
hg19
Lab
229
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
Capture-C
BIOSAMPLE
ASSAY
395 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
23
8
64
49
6
1
heart left ventricle
35
18
heart right ventricle
13
17
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
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