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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
39
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
74
Transcription
39
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
661
February, 2021
397
November, 2017
352
August, 2017
280
October, 2019
209
August, 2021
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
116
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
63
March, 2020
61
November, 2019
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
12
May, 2023
10
April, 2020
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
March, 2023
2
December, 2019
1
August, 2018
1
August, 2022
1
October, 2022
Available data
103
bed narrowPeak
64
xls
49
txt
45
bam
44
bigWig
25
tsv
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
208
Homo sapiens
Biosample type
123
tissue
44
cell line
42
in vitro differentiated cells
primary cell
Organ
122
kidney
31
liver
8
embryo
5
connective tissue
4
pancreas
2
epithelium
1
adipose tissue
Project
209
AMP
Genome assembly (visualization)
102
GRCh38
57
hg19
Lab
120
Katalin Susztak, Upenn
49
AMP-T2D consortium
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
single cell RNA-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
209 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
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