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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
76
ATAC-seq
64
total RNA-seq
25
ChIP-seq
6
snATAC-seq
4
Capture-C
1
Hi-C
1
RNA microarray
Assay category
82
DNA accessibility
64
Transcription
25
DNA binding
1
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
697
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
204
February, 2023
177
August, 2021
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
6
April, 2018
5
March, 2023
4
October, 2022
3
March, 2019
1
August, 2018
1
August, 2022
Available data
92
bed narrowPeak
64
xls
49
bam
49
txt
33
bigWig
24
tagAlign
15
tsv
5
bed bed3+
1
hic
Organism
176
Homo sapiens
Biosample type
121
tissue
42
in vitro differentiated cells
10
cell line
4
primary cell
Organ
120
kidney
8
embryo
6
epithelium
5
connective tissue
4
liver
2
pancreas
1
adipose tissue
Project
177
AMP
Genome assembly (visualization)
105
GRCh38
45
hg19
Lab
120
Katalin Susztak, Upenn
53
AMP-T2D consortium
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_title!
single cell RNA-seq
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
177 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
64
49
6
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
4
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