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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
43
DNA binding
6
DNA accessibility
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
155
August, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
71
November, 2018
56
May, 2022
53
February, 2021
50
May, 2020
49
April, 2018
48
July, 2018
47
September, 2023
40
May, 2024
40
September, 2020
34
December, 2018
33
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
19
April, 2020
16
January, 2021
15
October, 2017
13
November, 2019
6
September, 2017
3
August, 2018
3
December, 2019
3
February, 2023
3
July, 2019
3
June, 2018
3
March, 2020
3
May, 2023
1
August, 2022
Available data
98
tsv
30
bed narrowPeak
30
bigWig
24
bam
24
tagAlign
8
txt
3
bed bed3+
Organism
155
Homo sapiens
Biosample type
112
tissue
21
in vitro differentiated cells
18
cell line
4
primary cell
Organ
92
heart
22
liver
14
kidney
6
blood vessel
6
vasculature
4
epithelium
2
artery
Project
155
AMP
Genome assembly (visualization)
29
hg19
16
GRCh38
Lab
123
AMP-T2D consortium
18
Bing Ren, UCSD
14
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
155 results
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Clear Filters
single cell RNA-seq
ChIP-seq
snATAC-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
8
6
+ See 9 more…
in vitro differentiated cells
neural progenitor cell
21
cell line
HepG2
18
primary cell
hepatocyte
4
See all biosamples
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