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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
79
total RNA-seq
76
ATAC-seq
68
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
68
DNA binding
Target of assay
27
histone
27
histone modification
25
transcription factor
16
control
14
narrow histone mark
13
broad histone mark
7
RNA binding protein
6
chromatin remodeller
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
149
August, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
71
November, 2018
50
May, 2020
49
April, 2018
48
July, 2018
47
September, 2023
40
May, 2024
40
September, 2020
34
December, 2018
34
May, 2022
33
September, 2018
31
June, 2019
26
February, 2021
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
9
April, 2020
6
September, 2017
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
March, 2020
3
May, 2023
1
February, 2023
Available data
98
tsv
51
bed narrowPeak
51
bigWig
49
bam
25
fastq
24
tagAlign
21
bigBed narrowPeak
8
txt
3
bed bed3+
Organism
174
Homo sapiens
Biosample type
113
tissue
36
cell line
21
in vitro differentiated cells
4
primary cell
Organ
92
heart
22
liver
18
blood
18
bodily fluid
8
kidney
7
spleen
6
blood vessel
6
vasculature
4
epithelium
2
artery
Project
174
AMP
Genome assembly (visualization)
50
hg19
37
GRCh38
Lab
148
AMP-T2D consortium
18
Bing Ren, UCSD
8
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
174 results
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Clear Filters
single cell RNA-seq
ChIP-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
8
+ See 10 more…
cell line
GM12878
18
HepG2
18
in vitro differentiated cells
neural progenitor cell
21
primary cell
hepatocyte
4
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