Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
59
total RNA-seq
13
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
13
DNA binding
6
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
194
August, 2021
161
May, 2022
141
February, 2021
133
August, 2017
125
February, 2023
97
October, 2019
83
May, 2021
81
May, 2020
71
November, 2017
56
September, 2020
47
September, 2023
32
March, 2020
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
16
January, 2021
15
April, 2019
10
November, 2020
9
October, 2017
8
February, 2018
8
July, 2019
8
June, 2019
8
November, 2018
5
December, 2018
5
December, 2019
5
January, 2018
4
January, 2019
4
July, 2018
4
March, 2023
4
September, 2017
3
May, 2023
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
108
tsv
57
txt
8
bam
8
tagAlign
1
bedpe bed3+
1
vcf
Organism
193
Homo sapiens
Biosample type
164
tissue
21
cell line
8
in vitro differentiated cells
1
primary cell
Organ
92
heart
65
kidney
17
liver
6
blood vessel
6
vasculature
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
connective tissue
Project
194
AMP
Genome assembly (visualization)
GRCh38
hg19
Lab
110
AMP-T2D consortium
63
Katalin Susztak, Upenn
21
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
GRCh38
BIOSAMPLE
ASSAY
194 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
primary cell
hepatocyte
1
See all biosamples
Download