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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
single cell RNA-seq
103
ATAC-seq
85
total RNA-seq
41
WGBS
27
snATAC-seq
5
ChIP-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
225
Transcription
130
DNA accessibility
41
DNA methylation
5
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
5
control
Date released
250
August, 2021
161
May, 2022
156
February, 2023
141
February, 2021
125
November, 2017
116
August, 2017
97
October, 2019
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2021
40
May, 2024
31
June, 2019
30
March, 2020
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
12
December, 2017
10
November, 2020
10
October, 2017
7
August, 2020
5
December, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
3
December, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
January, 2018
1
October, 2022
1
September, 2018
Available data
134
zippedFastqFolder
108
tsv
64
bed narrowPeak
64
xls
63
txt
7
bam
6
fastq
1
bedpe bed3+
1
tagAlign
1
vcf
Organism
410
Homo sapiens
Biosample type
255
tissue
135
primary cell
21
cell line
in vitro differentiated cells
Organ
129
kidney
92
heart
90
pancreas
83
epithelium
37
liver
6
blood vessel
6
vasculature
2
artery
1
adipose tissue
1
connective tissue
1
musculature of body
Project
277
AMP
134
HPAP
Genome assembly (visualization)
75
GRCh38
hg19
Lab
134
Klaus Kaestner, Upenn
127
Katalin Susztak, Upenn
103
AMP-T2D consortium
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
411 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
liver
20
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 13 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
hepatocyte
1
cell line
HepG2
9
4
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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