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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
30
ChIP-seq
15
total RNA-seq
2
Capture-C
2
Hi-C
Assay category
76
DNA accessibility
30
DNA binding
15
Transcription
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
narrow histone mark
11
transcription factor
8
broad histone mark
1
RNA binding protein
Date released
574
February, 2021
335
November, 2017
316
May, 2021
278
August, 2017
260
May, 2020
217
October, 2019
210
June, 2019
164
July, 2018
125
August, 2021
100
July, 2019
97
May, 2019
80
February, 2023
80
November, 2018
77
December, 2017
72
September, 2018
65
April, 2019
59
November, 2019
49
April, 2018
47
October, 2018
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
3
September, 2020
1
March, 2023
Available data
106
bed narrowPeak
64
xls
47
bigWig
41
bam
16
tagAlign
15
tsv
5
bed bed3+
2
hic
1
bedpe bed3+
Organism
125
Homo sapiens
Biosample type
65
tissue
34
in vitro differentiated cells
23
cell line
3
primary cell
Organ
65
kidney
18
liver
8
embryo
4
connective tissue
3
epithelium
Project
125
AMP
Genome assembly (visualization)
105
GRCh38
60
hg19
Lab
65
Katalin Susztak, Upenn
41
AMP-T2D consortium
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
125 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
Capture-C
Hi-C
tissue
kidney
64
1
in vitro differentiated cells
neural progenitor cell
10
13
7
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
14
1
H1-hESC
8
primary cell
hepatocyte
3
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