Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
15
total RNA-seq
12
ATAC-seq
2
Capture-C
2
Hi-C
Assay category
18
DNA binding
15
Transcription
12
DNA accessibility
2
3D chromatin structure
Target of assay
18
histone
18
histone modification
11
narrow histone mark
transcription factor
7
broad histone mark
1
RNA binding protein
Date released
569
February, 2021
312
May, 2021
260
May, 2020
229
August, 2017
210
October, 2019
183
June, 2019
164
July, 2018
92
May, 2019
91
July, 2019
72
September, 2018
60
April, 2019
58
November, 2019
49
April, 2018
49
August, 2021
45
February, 2023
43
November, 2017
39
May, 2022
35
December, 2017
32
March, 2020
32
October, 2018
31
February, 2018
13
October, 2017
12
January, 2019
10
November, 2018
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
2
December, 2018
1
May, 2023
Available data
40
bam
35
bigWig
30
bed narrowPeak
15
tagAlign
15
tsv
5
bed bed3+
2
hic
1
bedpe bed3+
Organism
49
Homo sapiens
Biosample type
33
in vitro differentiated cells
12
cell line
3
primary cell
1
tissue
Organ
8
embryo
7
liver
4
connective tissue
3
epithelium
1
kidney
Project
49
AMP
Genome assembly (visualization)
105
GRCh38
49
hg19
Lab
40
AMP-T2D consortium
4
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
49 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
Hi-C
in vitro differentiated cells
neural progenitor cell
12
7
10
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
HepG2
3
1
primary cell
hepatocyte
3
tissue
kidney
1
Download