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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
total RNA-seq
43
ChIP-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
82
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
322
August, 2017
266
October, 2019
242
August, 2021
196
May, 2021
192
June, 2019
174
May, 2022
147
May, 2020
117
May, 2019
103
February, 2023
90
December, 2017
88
November, 2018
86
February, 2021
80
April, 2019
74
October, 2018
62
July, 2019
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
42
July, 2018
36
March, 2020
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
20
November, 2019
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
December, 2019
2
June, 2018
1
August, 2022
Available data
106
bed narrowPeak
98
tsv
64
xls
34
bam
32
bigWig
24
tagAlign
8
txt
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
241
Homo sapiens
Biosample type
179
tissue
35
in vitro differentiated cells
24
cell line
4
primary cell
Organ
92
heart
81
kidney
26
liver
6
blood vessel
6
vasculature
5
connective tissue
4
epithelium
2
artery
1
adipose tissue
1
pancreas
Project
242
AMP
Genome assembly (visualization)
90
GRCh38
45
hg19
Lab
134
AMP-T2D consortium
79
Katalin Susztak, Upenn
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
242 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
HEK293T
2
primary cell
hepatocyte
4
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