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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
59
total RNA-seq
13
ChIP-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
80
DNA accessibility
13
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
269
August, 2021
192
February, 2023
180
May, 2022
139
August, 2017
98
October, 2019
81
May, 2020
80
February, 2021
79
May, 2021
72
November, 2017
56
September, 2020
47
September, 2023
34
March, 2020
29
October, 2018
24
February, 2020
22
May, 2019
21
July, 2019
20
December, 2017
20
November, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
9
October, 2017
8
February, 2018
8
November, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
5
November, 2020
4
January, 2019
4
July, 2018
4
June, 2019
4
October, 2022
3
December, 2019
1
August, 2018
1
August, 2022
1
September, 2018
Available data
123
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
268
Homo sapiens
Biosample type
229
tissue
20
in vitro differentiated cells
19
cell line
1
primary cell
Organ
130
kidney
92
heart
18
liver
6
blood vessel
6
vasculature
3
connective tissue
2
artery
2
pancreas
1
adipose tissue
1
epithelium
Project
269
AMP
Genome assembly (visualization)
74
GRCh38
14
hg19
Lab
128
Katalin Susztak, Upenn
118
AMP-T2D consortium
21
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
269 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
cell line
HepG2
9
4
2
1
1
HEK293T
2
primary cell
hepatocyte
1
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