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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
single cell RNA-seq
76
ATAC-seq
63
total RNA-seq
25
ChIP-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
212
Transcription
82
DNA accessibility
25
DNA binding
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
155
tsv
92
bed narrowPeak
90
bam
74
bigWig
64
xls
57
txt
44
fastq
24
tagAlign
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
323
Homo sapiens
Biosample type
235
tissue
47
primary cell
cell line
42
in vitro differentiated cells
Organ
128
kidney
92
heart
41
pancreas
37
epithelium
7
connective tissue
6
blood vessel
6
vasculature
4
liver
2
artery
1
adipose tissue
Project
324
AMP
Genome assembly (visualization)
146
GRCh38
86
hg19
Lab
190
AMP-T2D consortium
128
Katalin Susztak, Upenn
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
biosample_type!
cell line
BIOSAMPLE
ASSAY
324 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 6 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
See all biosamples
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