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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
24
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
whole genome sequencing assay
Assay category
43
DNA binding
24
Transcription
12
DNA accessibility
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
89
August, 2021
73
September, 2018
68
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
27
December, 2018
27
July, 2019
23
January, 2019
21
March, 2020
20
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
May, 2019
5
September, 2017
4
August, 2018
4
March, 2023
3
June, 2018
2
October, 2018
1
October, 2022
Available data
49
bam
47
bigWig
42
bed narrowPeak
24
tagAlign
24
tsv
5
bed bed3+
1
vcf
Organism
89
Homo sapiens
Biosample type
tissue
43
cell line
42
in vitro differentiated cells
4
primary cell
Organ
34
liver
8
embryo
6
epithelium
4
connective tissue
2
kidney
2
pancreas
Project
89
AMP
Genome assembly (visualization)
58
hg19
41
GRCh38
Lab
52
AMP-T2D consortium
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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