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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
9
total RNA-seq
5
STARR-seq
4
Capture-C
2
ATAC-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
27
DNA binding
9
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
134
May, 2022
121
May, 2021
110
February, 2023
103
May, 2020
101
November, 2017
56
September, 2020
54
February, 2021
49
August, 2021
36
August, 2017
26
October, 2019
17
March, 2020
13
July, 2019
8
February, 2018
8
January, 2021
8
June, 2019
6
January, 2018
6
November, 2020
5
December, 2017
5
November, 2018
4
March, 2023
4
October, 2022
3
January, 2019
3
November, 2019
2
December, 2019
1
August, 2018
1
December, 2018
1
May, 2019
1
September, 2018
Available data
16
bed narrowPeak
16
bigWig
9
tsv
8
bam
8
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
49
Homo sapiens
Biosample type
tissue
36
cell line
12
in vitro differentiated cells
1
primary cell
Organ
32
liver
4
connective tissue
3
epithelium
2
kidney
2
pancreas
Project
49
AMP
Genome assembly (visualization)
59
hg19
GRCh38
Lab
34
Bing Ren, UCSD
11
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
assembly!
GRCh38
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Capture-C
ATAC-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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