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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
9
total RNA-seq
5
STARR-seq
4
Capture-C
2
ATAC-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
19
DNA binding
9
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
134
May, 2022
120
May, 2021
110
February, 2023
59
September, 2020
58
May, 2020
50
February, 2021
41
August, 2021
17
March, 2020
15
August, 2017
13
July, 2019
8
January, 2021
8
October, 2019
7
August, 2020
6
January, 2018
6
November, 2020
5
March, 2023
4
October, 2022
2
December, 2019
1
August, 2018
1
December, 2018
1
November, 2017
1
November, 2018
1
November, 2019
1
September, 2018
Available data
bam
47
bigWig
42
bed narrowPeak
24
tagAlign
24
tsv
5
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
41
Homo sapiens
Biosample type
tissue
36
cell line
5
in vitro differentiated cells
Organ
31
liver
4
connective tissue
2
epithelium
2
kidney
2
pancreas
Project
41
AMP
Genome assembly (visualization)
19
hg19
Lab
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
3
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bam
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Capture-C
ATAC-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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