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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
43
DNA binding
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
324
November, 2017
224
May, 2021
134
May, 2022
127
August, 2017
102
May, 2020
98
February, 2023
66
August, 2021
64
October, 2019
63
February, 2021
62
November, 2018
59
September, 2020
55
June, 2019
47
September, 2018
46
December, 2017
28
December, 2018
24
February, 2018
20
November, 2019
18
January, 2019
13
July, 2019
8
January, 2021
8
November, 2020
7
August, 2020
7
March, 2020
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
October, 2022
1
August, 2018
Available data
49
bam
47
bigWig
42
bed narrowPeak
24
tagAlign
tsv
5
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
66
Homo sapiens
Biosample type
tissue
35
in vitro differentiated cells
27
cell line
4
primary cell
Organ
26
liver
6
epithelium
4
connective tissue
2
kidney
2
pancreas
Project
66
AMP
Genome assembly (visualization)
44
hg19
26
GRCh38
Lab
37
AMP-T2D consortium
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
files.file_type!
tsv
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ChIP-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
in vitro differentiated cells
neural progenitor cell
21
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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