Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
24
total RNA-seq
10
ATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
Assay category
43
DNA binding
24
Transcription
10
DNA accessibility
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
107
February, 2023
85
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
49
bam
45
bigWig
40
bed narrowPeak
24
tagAlign
24
tsv
3
bed bed3+
1
bedpe bed3+
1
hic
vcf
Organism
85
Homo sapiens
Biosample type
tissue
43
cell line
38
in vitro differentiated cells
4
primary cell
Organ
34
liver
8
embryo
6
epithelium
2
kidney
2
pancreas
Project
85
AMP
Genome assembly (visualization)
55
hg19
41
GRCh38
Lab
52
AMP-T2D consortium
33
Bing Ren, UCSD
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
lab.title!
Struan F.A. Grant, CHOP
files.file_type!
vcf
BIOSAMPLE
ASSAY
85 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
cell line
HepG2
18
9
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
primary cell
hepatocyte
4
Download