Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
9
total RNA-seq
5
STARR-seq
2
ATAC-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
9
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
233
May, 2021
134
May, 2022
84
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
38
August, 2021
8
January, 2021
7
August, 2020
6
November, 2020
5
March, 2023
3
October, 2022
Available data
16
bed narrowPeak
16
bigWig
9
tsv
2
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
38
Homo sapiens
Biosample type
tissue
34
cell line
4
in vitro differentiated cells
Organ
31
liver
4
connective tissue
2
kidney
Project
38
AMP
Genome assembly (visualization)
19
hg19
Lab
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
month_released!
December, 2019
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
38 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
ATAC-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Download