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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
367
ChIP-seq
24
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
367
DNA binding
24
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
255
transcription factor
71
control
66
recombinant protein
38
RNA binding protein
38
histone
38
histone modification
21
narrow histone mark
17
broad histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
372
bam
324
bigWig
324
fastq
297
bed narrowPeak
255
bigBed narrowPeak
64
bed broadPeak
64
bigBed broadPeak
36
tagAlign
24
tsv
5
bed bed3+
3
tar
1
bedpe bed3+
1
hic
1
vcf
Organism
414
Homo sapiens
Biosample type
359
cell line
tissue
42
in vitro differentiated cells
13
primary cell
Organ
350
liver
12
epithelium
9
brain
8
embryo
6
vasculature
4
connective tissue
3
blood vessel
2
kidney
2
pancreas
Project
414
AMP
Genome assembly (visualization)
334
hg19
264
GRCh38
Lab
376
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
month_released!
December, 2019
BIOSAMPLE
ASSAY
414 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
333
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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