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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
39
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
67
DNA binding
39
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
36
histone
36
histone modification
20
control
19
narrow histone mark
17
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
88
bam
78
bigWig
58
bed narrowPeak
39
fastq
39
tsv
24
tagAlign
5
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
129
Homo sapiens
Biosample type
tissue
81
in vitro differentiated cells
44
cell line
4
primary cell
Organ
35
liver
21
embryo
6
epithelium
4
connective tissue
2
kidney
2
pancreas
Project
129
AMP
Genome assembly (visualization)
90
hg19
72
GRCh38
Lab
91
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
129 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
in vitro differentiated cells
neural progenitor cell
21
7
10
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
+ See 5 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
See all biosamples
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