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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
24
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
WGBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
149
DNA binding
25
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
79
transcription factor
46
histone
46
histone modification
25
narrow histone mark
24
RNA binding protein
24
control
21
broad histone mark
16
recombinant protein
8
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
156
bam
140
bigWig
134
bed narrowPeak
108
fastq
70
bigBed narrowPeak
24
tagAlign
24
tsv
20
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
1
vcf
Organism
198
Homo sapiens
Biosample type
tissue
105
cell line
85
in vitro differentiated cells
5
primary cell
3
stem cell
Organ
96
liver
25
epithelium
21
embryo
15
blood
15
bodily fluid
4
connective tissue
2
kidney
2
pancreas
Project
198
AMP
Genome assembly (visualization)
154
hg19
139
GRCh38
Lab
160
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
7
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
198 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
WGBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
63
9
2
1
1
1
GM12878
15
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
7
10
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
+ See 4 more…
primary cell
hepatocyte
4
pancreatic cell
1
stem cell
hESC
3
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