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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
50
total RNA-seq
10
ChIP-seq
9
DNase-seq
6
WGBS
6
snATAC-seq
2
Hi-C
1
FAIRE-seq
1
RNA microarray
Assay category
156
Transcription
80
DNA accessibility
10
DNA binding
6
DNA methylation
2
3D chromatin structure
Target of assay
7
transcription factor
3
control
3
other context
3
other post-translational modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
99
tsv
81
bed narrowPeak
64
xls
57
txt
26
bam
26
fastq
23
bigWig
17
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
254
Homo sapiens
Biosample type
255
tissue
105
cell line
42
in vitro differentiated cells
5
primary cell
Organ
128
kidney
92
heart
9
pancreas
9
spleen
7
liver
6
blood vessel
6
vasculature
2
adipose tissue
2
artery
2
brain
2
connective tissue
Project
255
AMP
Genome assembly (visualization)
86
GRCh38
18
hg19
Lab
128
Katalin Susztak, Upenn
125
AMP-T2D consortium
2
Bing Ren, UCSD
BIOSAMPLE
ASSAY
255 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
WGBS
snATAC-seq
Hi-C
FAIRE-seq
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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