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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
81
total RNA-seq
70
ATAC-seq
16
small RNA-seq
12
WGBS
6
Hi-C
6
RRBS
6
snATAC-seq
2
FAIRE-seq
1
RNA microarray
Assay category
203
Transcription
78
DNA accessibility
18
DNA methylation
6
3D chromatin structure
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
146
tsv
71
bed narrowPeak
64
bam
64
xls
63
bigWig
57
txt
14
bed bedMethyl
14
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe bed3+
1
hic
Organism
305
Homo sapiens
Biosample type
306
tissue
44
cell line
42
in vitro differentiated cells
35
primary cell
Organ
132
kidney
112
heart
13
blood vessel
13
vasculature
11
adipose tissue
11
brain
11
connective tissue
8
liver
8
pancreas
7
musculature of body
5
limb
3
artery
1
pericardium
Project
306
AMP
Genome assembly (visualization)
125
GRCh38
61
hg19
Lab
176
AMP-T2D consortium
128
Katalin Susztak, Upenn
2
Bing Ren, UCSD
BIOSAMPLE
ASSAY
306 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
Hi-C
RRBS
snATAC-seq
FAIRE-seq
RNA microarray
tissue
kidney
8
49
64
1
1
6
1
heart left ventricle
18
2
2
4
1
heart right ventricle
17
2
right cardiac atrium
18
1
left cardiac atrium
18
aorta
4
2
subcutaneous adipose tissue
4
1
1
omental fat pad
4
1
right lobe of liver
2
2
1
aortic valve
4
body of pancreas
2
2
gastrocnemius medialis
4
heart
2
1
1
pulmonary valve
4
tricuspid valve
4
frontal cortex
1
1
1
islet of Langerhans
1
1
1
liver
2
1
mitral valve
3
right atrium auricular region
2
1
thoracic aorta
2
1
cardiac atrium
2
cardiac ventricle
2
diencephalon
1
1
interventricular septum
2
metanephros
1
1
occipital lobe
1
1
parietal lobe
1
1
pulmonary artery
2
skeletal muscle tissue
1
1
temporal lobe
1
1
ascending aorta
1
brain
1
cerebellum
1
cerebellum (Hemisphere)
1
coronary artery
1
muscle of leg
1
pancreas
1
pericardium
1
posterior cingulate cortex
1
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