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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
ATAC-seq
59
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
72
DNA accessibility
DNA binding
3
3D chromatin structure
1
DNA sequencing
Date released
251
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
59
September, 2020
58
May, 2020
48
March, 2020
48
May, 2021
47
September, 2023
41
October, 2019
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
August, 2017
10
November, 2020
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
October, 2017
1
September, 2018
Available data
123
tsv
76
bed narrowPeak
64
xls
57
txt
bam
17
bigWig
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
250
Homo sapiens
Biosample type
229
tissue
18
cell line
4
in vitro differentiated cells
Organ
130
kidney
92
heart
13
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
251
AMP
Genome assembly (visualization)
64
GRCh38
6
hg19
Lab
128
Katalin Susztak, Upenn
101
AMP-T2D consortium
18
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bam
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
251 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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