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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
ATAC-seq
50
total RNA-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
ChIP-seq
1
RNA microarray
Assay category
156
Transcription
72
DNA accessibility
2
3D chromatin structure
1
DNA binding
Target of assay
1
broad histone mark
1
histone
1
histone modification
Date released
234
August, 2021
199
February, 2023
176
May, 2022
142
February, 2021
129
August, 2017
106
May, 2021
63
October, 2019
59
September, 2020
57
May, 2020
47
September, 2023
42
March, 2020
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
13
November, 2017
8
October, 2017
7
August, 2020
7
January, 2018
5
December, 2019
4
July, 2018
4
March, 2019
4
November, 2020
3
March, 2023
3
October, 2022
1
April, 2019
1
August, 2018
1
August, 2022
1
November, 2018
1
November, 2019
1
September, 2018
Available data
106
tsv
92
bed narrowPeak
64
xls
57
txt
bam
25
bigWig
24
tagAlign
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
233
Homo sapiens
Biosample type
229
tissue
cell line
5
in vitro differentiated cells
Organ
128
kidney
92
heart
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
234
AMP
Genome assembly (visualization)
64
GRCh38
5
hg19
Lab
128
Katalin Susztak, Upenn
100
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
files.file_type!
bam
biosample_type!
cell line
BIOSAMPLE
ASSAY
234 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
Hi-C
ChIP-seq
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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