Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
64
ATAC-seq
18
ChIP-seq
10
total RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
108
Transcription
70
DNA accessibility
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
208
August, 2021
185
February, 2023
175
May, 2022
115
August, 2017
75
May, 2021
60
October, 2019
59
September, 2020
58
May, 2020
50
February, 2021
47
September, 2023
42
March, 2020
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
October, 2017
7
August, 2020
5
March, 2023
4
January, 2018
4
July, 2018
4
March, 2019
3
December, 2019
3
October, 2022
2
November, 2019
1
April, 2019
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
116
tsv
81
bed narrowPeak
64
xls
txt
25
bigWig
bam
4
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
207
Homo sapiens
Biosample type
172
tissue
36
cell line
in vitro differentiated cells
Organ
92
heart
73
kidney
31
liver
6
blood vessel
6
vasculature
4
pancreas
2
artery
2
epithelium
1
adipose tissue
1
connective tissue
Project
208
AMP
Genome assembly (visualization)
64
GRCh38
16
hg19
Lab
101
AMP-T2D consortium
71
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bam
txt
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
208 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
18
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
See all biosamples
Download