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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
19
ChIP-seq
10
total RNA-seq
5
STARR-seq
4
Capture-C
2
ATAC-seq
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
108
Transcription
19
DNA binding
2
3D chromatin structure
2
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
205
February, 2023
176
May, 2022
143
February, 2021
142
August, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
May, 2023
1
November, 2018
1
September, 2018
Available data
123
tsv
bam
47
bigWig
42
bed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
141
Homo sapiens
Biosample type
101
tissue
36
cell line
5
in vitro differentiated cells
Organ
92
heart
31
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
2
kidney
1
adipose tissue
Project
142
AMP
Genome assembly (visualization)
19
hg19
Lab
Katalin Susztak, Upenn
102
AMP-T2D consortium
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bam
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
142 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
STARR-seq
Capture-C
ATAC-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
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cell line
HepG2
18
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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