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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
single cell RNA-seq
85
RNA microarray
70
ATAC-seq
49
total RNA-seq
33
snATAC-seq
6
WGBS
4
Capture-C
3
snDrop-seq
1
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
173
Transcription
103
DNA accessibility
6
DNA methylation
1
3D chromatin structure
1
DNA binding
Target of assay
1
broad histone mark
1
histone
1
histone modification
Date released
234
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
October, 2022
2
March, 2019
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
672
tsv
bam
584
bigWig
146
txt
115
bed narrowPeak
64
xls
45
fastq
32
tagAlign
7
bed bed3+
6
csv
4
bed bedgraph
2
bed bed3
1
hic
Organism
376
Homo sapiens
Biosample type
320
tissue
45
primary cell
9
in vitro differentiated cells
3
cell line
Organ
136
kidney
92
heart
84
bone element
9
connective tissue
8
epithelium
8
pancreas
6
blood vessel
6
vasculature
2
artery
2
liver
1
adipose tissue
Project
332
AMP
45
HPAP
Genome assembly (visualization)
64
GRCh38
10
hg19
Lab
200
AMP-T2D consortium
128
Katalin Susztak, Upenn
45
Klaus Kaestner, Upenn
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
86
inconsistent ontology term
32
audit script error
files.file_type!
bam
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
377 results
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single cell RNA-seq
RNA microarray
ATAC-seq
total RNA-seq
snATAC-seq
WGBS
Capture-C
snDrop-seq
ChIP-seq
Hi-C
pCHi-C
tissue
kidney
13
64
49
6
1
bone element
84
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
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primary cell
Langerhans cell
12
27
pancreatic alpha cell
6
in vitro differentiated cells
adipocyte
5
1
osteoblast
1
1
neural progenitor cell
1
cell line
EndoC_BH1
2
HepG2
1
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