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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
single cell RNA-seq
85
RNA microarray
70
ATAC-seq
59
total RNA-seq
33
snATAC-seq
19
ChIP-seq
5
STARR-seq
3
Hi-C
3
snDrop-seq
2
Capture-C
1
pCHi-C
1
whole genome sequencing assay
Assay category
183
Transcription
103
DNA accessibility
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
268
August, 2021
153
February, 2023
137
February, 2021
129
August, 2017
106
May, 2021
96
May, 2022
61
October, 2019
58
May, 2020
47
September, 2023
45
March, 2020
40
May, 2024
40
September, 2020
25
February, 2020
19
April, 2020
18
July, 2019
16
January, 2021
15
May, 2023
14
November, 2017
8
January, 2018
8
October, 2017
5
March, 2023
4
December, 2019
4
July, 2018
4
March, 2019
4
November, 2020
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
November, 2019
1
October, 2022
1
September, 2018
Available data
650
tsv
bam
569
bigWig
146
txt
126
bed narrowPeak
64
xls
39
fastq
28
tagAlign
6
csv
4
bed bed3+
4
bed bedgraph
2
bed bed3
2
bedpe bed3+
2
hic
1
vcf
Organism
404
Homo sapiens
Biosample type
322
tissue
39
primary cell
35
cell line
9
in vitro differentiated cells
Organ
138
kidney
92
heart
84
bone element
33
liver
10
pancreas
9
connective tissue
epithelium
6
blood vessel
6
vasculature
2
artery
1
adipose tissue
Project
366
AMP
39
HPAP
Genome assembly (visualization)
64
GRCh38
25
hg19
Lab
198
AMP-T2D consortium
128
Katalin Susztak, Upenn
39
Klaus Kaestner, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
32
audit script error
files.file_type!
bam
organ_slims!
epithelium
BIOSAMPLE
ASSAY
405 results
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single cell RNA-seq
RNA microarray
ATAC-seq
total RNA-seq
snATAC-seq
ChIP-seq
STARR-seq
Hi-C
snDrop-seq
Capture-C
pCHi-C
whole genome sequencing assay
tissue
kidney
13
64
49
6
1
bone element
84
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 16 more…
primary cell
Langerhans cell
12
27
cell line
HepG2
9
18
2
1
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
5
1
osteoblast
1
1
neural progenitor cell
1
See all biosamples
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