Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
87
ATAC-seq
65
total RNA-seq
56
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
pCHi-C
1
whole genome sequencing assay
Assay category
171
Transcription
93
DNA accessibility
56
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
24
histone
24
histone modification
23
transcription factor
12
broad histone mark
12
narrow histone mark
9
control
6
RNA binding protein
Date released
270
August, 2021
128
August, 2017
117
February, 2023
98
February, 2021
65
May, 2021
61
October, 2019
47
March, 2020
47
September, 2023
42
May, 2022
40
May, 2024
25
February, 2020
19
April, 2020
15
May, 2023
14
November, 2017
13
July, 2019
10
November, 2020
8
January, 2018
8
January, 2021
8
October, 2017
5
December, 2019
4
July, 2018
4
March, 2019
4
March, 2023
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
May, 2020
1
October, 2022
Available data
244
tsv
176
bigWig
bam
109
bed narrowPeak
64
xls
57
txt
26
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
334
Homo sapiens
Biosample type
231
tissue
primary cell
52
cell line
52
in vitro differentiated cells
Organ
130
kidney
92
heart
31
liver
21
pancreas
18
epithelium
6
blood vessel
6
vasculature
5
connective tissue
2
artery
1
adipose tissue
1
thymus
Project
334
AMP
1
T1D
Genome assembly (visualization)
64
GRCh38
25
hg19
Lab
128
Katalin Susztak, Upenn
118
AMP-T2D consortium
49
Kyle Gaulton, UCSD
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
19
inconsistent ontology term
files.file_type!
bam
biosample_type!
primary cell
BIOSAMPLE
ASSAY
335 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
pCHi-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
16
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
embryonic stem cell
5
5
37
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
See all biosamples
Download