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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
ATAC-seq
58
total RNA-seq
19
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
164
Transcription
72
DNA accessibility
19
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
266
August, 2021
149
February, 2023
137
February, 2021
109
August, 2017
105
May, 2021
96
May, 2022
60
October, 2019
58
May, 2020
47
September, 2023
40
March, 2020
40
May, 2024
40
September, 2020
24
February, 2020
24
July, 2019
19
April, 2020
15
May, 2023
14
November, 2017
8
January, 2018
8
January, 2021
7
October, 2017
5
December, 2019
5
March, 2023
1
April, 2019
1
August, 2018
1
December, 2018
1
November, 2018
1
October, 2022
1
September, 2018
Available data
122
tsv
106
bed narrowPeak
64
xls
57
txt
bam
47
bigWig
24
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
265
Homo sapiens
Biosample type
227
tissue
34
cell line
5
in vitro differentiated cells
Organ
130
kidney
92
heart
31
liver
6
blood vessel
6
vasculature
5
connective tissue
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
266
AMP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
128
Katalin Susztak, Upenn
100
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
organ_slims!
pancreas
BIOSAMPLE
ASSAY
266 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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